Publication
(Research Article)
[2021]
Yamauchi T, Pedersen, O, Nakazono M, Tsutsumi N. (2021) Key root traits of Poaceae respond to gradients in soil water. New Phytologist 229: 3133−3140.
[2020]
Arimura S, Ayabe H, Sugaya H, Okuno M, Tamura Y, Tsuruta Y, Watari Y, Yanase, S, Yamauchi T, Itoh T, Toyoda, A, Takanashi H, Tsutsumi N. (2020) Targeted gene disruption of ATP synthases 6-1 and 6-2 in the mitochondrial genome of Arabidopsis thaliana by mitoTALENs. The Plant Journal 104: 1459−1471.
Yamauchi T, Tanaka A, Tsutsumi N, Inukai Y, Nakazono M. (2020) Distance-to-time conversion by using the Gompertz model reveals the age-dependent aerenchyma formation in rice roots. Plant Physiology 183: 1424−1427.
Yamauchi T, Tanaka, A, Tsutsumi N, Inukai Y, Nakazono M. (2020) A role for auxin in ethylene-dependent inducible aerenchyma formation in rice roots. Plants 9: 610.
[2019]
Yamauchi T, Tanaka A, Inahashi H, Nishizawa NK, Tsutsumi N, Inukai Y, Nakazono M. (2019) Fine control of aerenchyma and lateral root development through AUX/IAA- and ARF-dependent auxin signaling. Proceedings of the National Academy of Sciences of the USA 116: 20770−20775.
Yamauchi T, Abe F, Tsutsumi N, Nakazono M. (2019) Root cortex provides a venue for gas-space formation and is essential for plant adaptation to waterlogging. Frontiers in Plant Science 10: 259.
[2018]
Inahashi H, Shelly IJ, Yamauchi T, Nishiuchi S, Takahashi-Nosaka M, Matsunami M, Ogawa A, Noda Y, Inukai Y. (2018) OsPIN2, which encodes a member of the auxin efflux carrier proteins, is involved in root elongation growth and lateral root formation patterns via the regulation of auxin distribution in rice. Physiologia Plantarum 164: 216−225.
[2017]
Yamauchi T, Yoshioka M, Fukazawa A, Mori H, Nishizawa NK, Tsutsumi N, Yoshioka H, Nakazono M. (2017) An NADPH oxidase RBOH functions in rice roots during lysigenous aerenchyma formation under oxygen-deficient conditions. The Plant Cell 29: 775−790.
Yamauchi T, Fukazawa A, Nakazono M. (2017) METALLOTHIONEIN genes encoding ROS scavenging enzymes are down-regulated in the root cortex during inducible aerenchyma formation in rice. Plant Signaling & Behavior 12: e1388976.
[Before 2016]
Yamauchi T, Tanaka A, Mori H, Takamure I, Kato K, Nakazono M. (2016) Ethylene-dependent aerenchyma formation in adventitious roots is regulated differently in rice and maize. Plant, Cell & Environment 39: 2145−2157.
Yamauchi T, Shiono K, Nagano M, Fukazawa A, Ando M, Takamure I, Mori H, Nishizawa NK, Kawai-Yamada M,Tsutsumi N, Kato K, Nakazono M. (2015) Ethylene biosynthesis is promoted by very-long-chain fatty acids during lysigenous aerenchyma formation in rice roots. Plant Physiology 169: 180−193.
Takahashi H, Yamauchi T, Rajhi I, Nishizawa NK, Nakazono M. (2015) Transcript profiles in cortical cells of maize primary root during ethylene-induced lysigenous aerenchyma formation under aerobic conditions. Annals of Botany 115: 879−894.
Takano S, Matsuda S, Funabiki A, Furukawa J, Yamauchi T, Tokuji Y, Nakazono M, Shinohara Y, Takamure I, Kato K. (2015) The rice RCN11 gene encodes β1,2-xylosyltransferase and is required for plant responses to abiotic stresses and phytohormones. Plant Science 236: 75−88.
Cartagena JA, Seki M, Tanaka M, Yamauchi T, Sato S, Hirakawa H, Tsuge T. (2015) Gene expression profiles in Jatropha under drought stress and during recovery. Plant Molecular Biology Reporter 33: 1075−1087.
Kulichikhin K, Yamauchi T, Watanabe K, Nakazono M. (2014) Biochemical and molecular characterization of rice (Oryza sativa L.) roots forming a barrier to radial oxygen loss. Plant, Cell & Environment 37: 2406−2420.
Shiono K, Yamauchi T, Yamazaki S, Mohanty B, Malik AI, Nagamura Y, Nishizawa NK, Tsutsumi N, Colmer TD, Nakazono M. (2014) Microarray analysis of laser-microdissected tissues indicates the biosynthesis of suberin in the outerpart of roots during formation of a barrier to radial oxygen loss in rice (Oryza sativa). Journal of Experimental Botany 65: 4795−4806.
Yamauchi T, Abe F, Kawaguchi K, Oyanagi A, Nakazono M. (2014) Adventitious roots of wheat seedlings that emergein oxygen-deficient conditions have increased root diameters with highly developed lysigenous aerenchyma. Plant Signaling & Behavior 9: e28506.
Yamauchi T, Johzuka-Hisatomi Y, Terada R, Nakamura I, Iida S. (2014) The MET1b gene encoding a maintenance DNA methyltransferase is indispensable for normal development in rice. Plant Molecular Biology 85: 219−232.
Hu Z, Yamauchi T, Yang J, Jikumaru Y, Tsuchida-Mayama T, Ichikawa H, Takamure I, Nagamura Y, Tsutsumi N,Yamaguchi S, Kyozuka J, Nakazono M. (2014) Strigolactone and cytokinin act antagonistically in regulating rice mesocotyl elongation in darkness. Plant and Cell Physiology 55: 30−41.
Yamauchi T, Watanabe K, Fukazawa A, Mori H, Abe F, Kawaguchi K, Oyanagi A, Nakazono M. (2014) Ethylene and reactive oxygen species are involved in root aerenchyma formation and adaptation of wheat seedlings to oxygen-deficient conditions. Journal of Experimental Botany 65: 261−273.
Abiko T, Obara M, Abe F, Kawaguchi K, Oyanagi A, Yamauchi T, Nakazono M. (2012) Screening of candidate genes associated with constitutive aerenchyma formation in adventitious roots of the teosinte Zea nicaraguensis. Plant Root 6: 19−27.
Rajhi I, Yamauchi T, Takahashi H, Nishiuchi S, Shiono K, Watanabe R, Mliki A, Nagamura Y, Tsutsumi N, Nishizawa NK, Nakazono M. (2011) Identification of genes expressed in maize root cortical cells during lysigenous aerenchyma formation using laser microdissection and microarray analyses. New Phytologist 190: 351−368.
Yamauchi T, Rajhi I, Nakazono M. (2011) Lysigenous aerenchyma formation in maize root is confined to cortical cells by regulation of genes related to generation and scavenging of reactive oxygen species. Plant Signaling & Behavior 6: 759−761.
Yamauchi T, Johzuka-Hisatomi Y, Fukada-Tanaka S, Terada R, Nakamura I, Iida S. (2009) Homologous recombination-mediated knock-in targeting of the MET1a gene for a maintenance DNA methyltransferase reproducibly reveals dosage-dependent spatiotemporal gene expression in rice. The Plant Journal 60: 386−396.
Yamauchi T, Moritoh S., Johzuka-Hisatomi Y, Ono A, Terada R, Nakamura I, Iida S. (2008) Alternative splicing of the rice OsMET1 genes encoding maintenance DNA methyltransferase. Journal of Plant Physiology 165: 1774−1782.
(Review Article)
Yamauchi T, Noshita K, Tsutsumi N. (2021) Climate-smart crops: key root anatomical traits that confer flooding tolerance. Breeding Science 71: 51−61.
Yamauchi T, Colmer TD, Pedersen O, Nakazono M. (2018) Regulation of root traits for internal aeration and tolerance to soil waterlogging-flooding stress. Plant Physiology 176: 1118−1130.
Yamauchi T, Shimamura S, Nakazono M, Mochizuki T. (2013) Aerenchyma formation in crop species: a review. Field Crops Research 152: 8−16.
Nishiuchi S, Yamauchi T, Takahashi H, Kotula L, Nakazono M. (2012) Mechanisms for coping with submergence andwaterlogging in rice. Rice 5: 2.
(Book Chapter)
Yamauchi T, Iida S. (2015) Gene targeting in crop species with effective selection systems. In Advances in New Technology for Targeted Modification of Plant Genomes, Springer, 91−111.
Takahashi H, Yamauchi T, Colmer TD, Nakazono M. (2014) Aerenchyma formation in plants. In Low-oxygen stress inplants: Oxygen sensing and adaptive responses to hypoxia, Springer, 247−265.
(和文総説・解説等)
野村康之, 塩野克宏, 島村 聡, 山内 卓樹. (2021) 植物組織の空隙率測定方法―3. 切片法―. 根の研究 (印刷中)
宮下 智貴, 江尻 真斗, 島村 聡, 山内 卓樹, 塩野 克宏. (2021) 植物組織の空隙率測定方法―2. アルキメデス法―. 根の研究 30: 41−45.
島村聡, 塩野克宏, 山内卓樹. (2021) 植物組織の空隙率測定方法―1. 比重瓶法―. 根の研究 30: 8−12.
山内卓樹, 中園幹生. (2015) イネ科植物の根における過湿環境への形態的な応答・適応機構. 根の研究 24: 23−35.
山内卓樹, 中園幹生. (2014) イネ科作物の過湿環境への応答を制御する分子機構. 水田転作圃場における湿害対策, 農業および園芸 養賢堂, 89: 1023−1029.
山内卓樹, 西内俊策, 中園幹生. (2012) 植物の通気組織形成過程におけるメタロチオネインの組織特異的な発現制御. 生化学 84: 857−862.
定塚(久富)恵世, 山内卓樹, 飯田滋. (2011) メンデルの法則における不完全優性と植物の遺伝子量効果. 生化学 83: 638−642.
(書籍等)
山内卓樹. イネが水田で生育するしくみ ―根の解剖学的観点から―. 農業技術大系・作物編（追録第41号）農山漁村文化協会 2020.
山内卓樹. イネが水田で生育するしくみ ―根の解剖学的観点から―. イネ大事典 農山漁村文化協会, 2020.
山内卓樹. イネの過湿土壌への適応に貢献する根の解剖学的特徴. 最新農業技術 作物 vol.9: 特集:水田雑草/イネ多収品種, 農山漁村文化協会, 2017.
山内卓樹, 星野敦. 遺伝子のノックアウトとノックダウン. 植物学の百科事典, 日本植物学会編, 丸善出版, 2016.
山内卓樹. イネの過湿土壌への適応に貢献する根の解剖学的特徴. 農業技術大系・作物編（追録第38号）農山漁村文化協会 2016.